annsel.datasets.leukemic_bone_marrow_dataset

annsel.datasets.leukemic_bone_marrow_dataset#

annsel.datasets.leukemic_bone_marrow_dataset(backed=None)[source]#

Load a leukemic bone marrow cytometry dataset.

This single cell cytometry dataset is from 15 leukemic bone marrow donors. It consists of 31,586 cells and 458 genes.

The saved file contains the following notable metrics (and more):

  • obs: clustering information, cell type associations, developmental stage,

  • var: vst.mean, vst.variance, feature_name, feature_type

  • uns: cell_type_ontology_term_id_colors

  • obsm: PCA, UMAP and tSNE embeddings

Parameters:
backed Union[bool, Literal['r', 'r+'], None] (default: None)

Whether to load the dataset in backed mode.

Notes

View the dataset at CxG.

References

[TVJS+21]

Download Size: 25.7 MB

Return type:

AnnData

Returns:

The Leukemic Bone Marrow Donors dataset as an AnnData object.

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